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Bacterial DNA was extracted from infant fecal samples and analyzed by shotgun metagenomic sequencing to profile gut microbiome at the genus level. Correlations are shown between the relative abundance of bacterial genera and fecal IgA against (A) EHEC, (B) Salmonella , and (C) Shigella .

Journal: bioRxiv

Article Title: Discovery of Novel Probiotic Species to Improve Infant Health

doi: 10.1101/2025.10.27.684727

Figure Lengend Snippet: Bacterial DNA was extracted from infant fecal samples and analyzed by shotgun metagenomic sequencing to profile gut microbiome at the genus level. Correlations are shown between the relative abundance of bacterial genera and fecal IgA against (A) EHEC, (B) Salmonella , and (C) Shigella .

Article Snippet: To prepare bacterial DNA samples for microbiome analysis, 100 mg of frozen fecal material was placed in Fast Prep Lysing Matrix D tubes containing ceramic beads (MP Biomedicals) and incubated in 1 mL of PBS on ice for 1 hour.

Techniques: Sequencing

Microbial community divergence pattern across sampling sites a) Alpha diversity, b) Beta diversity; Each dot on the beta diversity plot represents the whole microbial composition profile.

Journal: bioRxiv

Article Title: Exploring the Microbial Geobiological Pattern Across the Serpentinization Sites through Metagenomic and Elemental Composition Analyses

doi: 10.1101/2025.09.26.678891

Figure Lengend Snippet: Microbial community divergence pattern across sampling sites a) Alpha diversity, b) Beta diversity; Each dot on the beta diversity plot represents the whole microbial composition profile.

Article Snippet: The samples were processed and analyzed with the ZymoBIOMICS® Shotgun Metagenomic Sequencing Service for Microbiome Analysis (Zymo Research, Irvine, CA).

Techniques: Sampling

NMDS analysis of microbial community composition across sampling sites

Journal: bioRxiv

Article Title: Exploring the Microbial Geobiological Pattern Across the Serpentinization Sites through Metagenomic and Elemental Composition Analyses

doi: 10.1101/2025.09.26.678891

Figure Lengend Snippet: NMDS analysis of microbial community composition across sampling sites

Article Snippet: The samples were processed and analyzed with the ZymoBIOMICS® Shotgun Metagenomic Sequencing Service for Microbiome Analysis (Zymo Research, Irvine, CA).

Techniques: Sampling